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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25190073_25193110_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25190073 - 25193110
Intron Length:
3038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATATTT
Flanking Amino Acid:
LRMDKQNNRKRETSNDKTAK
Intron Amino Acid Position:
589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.7
34.8
Major BPS
100
1.24
0.5
100
0
Major PPT
82.2
0.72
1
79.9
37.7
Minor 5ss
39.4
-1.2
2.8
51.2
45.3
Minor BPS
61
0.42
1.8
84.33
36.6

Associated Gene:

Gene:
NSD2
Ensembl Gene ID:
ENSAPLG00000003770
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040197
25143984 - 25218261
74278
ENSAPLT00000003882
25155210 - 25218261
63052
ENSAPLT00000040268
25135563 - 25218321
82759