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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25190073_25206416_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25190073 - 25206416
Intron Length:
16344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTATG
5'SS Class:
strong_major
3'SS Sequence:
GTTTAATCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
CTTTCTCTAACA
Flanking Amino Acid:
LRMDKQNNRKISDGQGDERS
Intron Amino Acid Position:
589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.7
34.8
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
78.8
0.65
0.9
74.7
39.9
Minor 5ss
39.4
-1.2
2.8
51.2
45.3
Minor BPS
69.5
0.61
1.7
79.78
36.5

Associated Gene:

Gene:
NSD2
Ensembl Gene ID:
ENSAPLG00000003770
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043133
25155210 - 25218261
63052