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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25206549_25207613_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
25206549 - 25207613
Intron Length:
1065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTGTAAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTTTCTTTAACA
Flanking Amino Acid:
AGTKKEYVCQLCEKTGDLLL
Intron Amino Acid Position:
702

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
59.2
0.21
1.2
60.3
44.1
Minor 5ss
26.7
-2.7
3.3
37.5
47.2
Minor BPS
92.1
1.32
0.7
95.26
19.9

Associated Gene:

Gene:
NSD2
Ensembl Gene ID:
ENSAPLG00000003770
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043133
25155210 - 25218261
63052
ENSAPLT00000040268
25135563 - 25218321
82759
ENSAPLT00000040197
25143984 - 25218261
74278
ENSAPLT00000003882
25155210 - 25218261
63052