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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25207738_25208763_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25207738 - 25208763
Intron Length:
1026

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGCCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTACTT
Flanking Amino Acid:
GKFICSECTSGVHTCFVCKE
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.8
1.13
0.8
81.8
38.5
Major BPS
100
1.24
0.5
100
0
Major PPT
70.2
0.45
0.9
63.7
38.1
Minor 5ss
33.5
-1.9
4
48.7
47.5
Minor BPS
67.9
0.64
1.9
89.07
35.8

Associated Gene:

Gene:
NSD2
Ensembl Gene ID:
ENSAPLG00000003770
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043133
25155210 - 25218261
63052
ENSAPLT00000040268
25135563 - 25218321
82759
ENSAPLT00000040197
25143984 - 25218261
74278
ENSAPLT00000003882
25155210 - 25218261
63052