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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25211001_25211822_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25211001 - 25211822
Intron Length:
822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGATGA
5'SS Class:
major
3'SS Sequence:
ACTTCTGTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TCTATTTGTACT
Flanking Amino Acid:
DIIWVKLGNYRWWPAEVCHP
Intron Amino Acid Position:
862

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.41
1.3
61.3
40.1
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
64.3
0.32
1
58.2
42.5
Minor 5ss
38.8
-1.3
2.8
48.3
47.2
Minor BPS
48.3
-0
1.8
68.59
42.3

Associated Gene:

Gene:
NSD2
Ensembl Gene ID:
ENSAPLG00000003770
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040197
25143984 - 25218261
74278
ENSAPLT00000003882
25155210 - 25218261
63052
ENSAPLT00000043133
25155210 - 25218261
63052
ENSAPLT00000040268
25135563 - 25218321
82759