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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25212029_25212454_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25212029 - 25212454
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACATAGC
5'SS Class:
major
3'SS Sequence:
CAATCTCTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTTGATA
Flanking Amino Acid:
IKGIGKVFKNALQEAEARFR
Intron Amino Acid Position:
931

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
62.4
42.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
73.1
0.52
0.9
70.2
35.8
Minor 5ss
34.5
-1.8
3
42.7
39.2
Minor BPS
74.5
0.76
1
81.02
27.4

Associated Gene:

Gene:
NSD2
Ensembl Gene ID:
ENSAPLG00000003770
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043133
25155210 - 25218261
63052
ENSAPLT00000040268
25135563 - 25218321
82759
ENSAPLT00000040197
25143984 - 25218261
74278
ENSAPLT00000003882
25155210 - 25218261
63052