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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25213074_25213168_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25213074 - 25213168
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGGTATCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAC
U12 Branch Point Sequence:
TATACTTTACCA
Flanking Amino Acid:
GLVAKRDIKKGEFVNEYVGE
Intron Amino Acid Position:
1056

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
87
27.8
Major BPS
61.6
0.29
1
59
37.6
Major PPT
77.6
0.62
0.9
73.8
41.4
Minor 5ss
46.4
-0.4
2.5
62.6
42.2
Minor BPS
63.5
0.42
1.6
73.19
38.6

Associated Gene:

Gene:
NSD2
Ensembl Gene ID:
ENSAPLG00000003770
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040268
25135563 - 25218321
82759
ENSAPLT00000040197
25143984 - 25218261
74278
ENSAPLT00000003882
25155210 - 25218261
63052
ENSAPLT00000043133
25155210 - 25218261
63052