About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25215843_25216904_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25215843 - 25216904
Intron Length:
1062

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTAATCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TGCAACTTAATC
Flanking Amino Acid:
CSGFLGDRPKNSSTNASEEK
Intron Amino Acid Position:
1178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.3
1.16
0.7
90.9
28.7
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
76.8
0.6
0.8
73.9
36.3
Minor 5ss
27.1
-2.6
3.8
41.5
45.1
Minor BPS
59.4
0.27
1.6
65
40.5

Associated Gene:

Gene:
NSD2
Ensembl Gene ID:
ENSAPLG00000003770
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040197
25143984 - 25218261
74278
ENSAPLT00000003882
25155210 - 25218261
63052
ENSAPLT00000043133
25155210 - 25218261
63052
ENSAPLT00000040268
25135563 - 25218321
82759