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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25217110_25217992_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25217110 - 25217992
Intron Length:
883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGGTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCCCTAGTAATT
Flanking Amino Acid:
SCLGLVKRPFGKWECPWHHC
Intron Amino Acid Position:
1246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.2
35.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
74.7
0.56
1
68.1
42.3
Minor 5ss
29.2
-2.4
2.8
32.4
36.1
Minor BPS
44.3
-0.3
2.1
61.39
43.1

Associated Gene:

Gene:
NSD2
Ensembl Gene ID:
ENSAPLG00000003770
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040268
25135563 - 25218321
82759
ENSAPLT00000040197
25143984 - 25218261
74278
ENSAPLT00000003882
25155210 - 25218261
63052
ENSAPLT00000043133
25155210 - 25218261
63052