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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25230553_25231974_R

Intron Information:

Intron Rank:
141234
Intron Class:
major
Intron Phase:
Intron Coordinates:
25230553 - 25231974
Intron Length:
1422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTGAC
5'SS Class:
major
3'SS Sequence:
CTGTTCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAC
U12 Branch Point Sequence:
ATCACCCTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
69.5
35.6
Major BPS
61.7
0.29
1
63.7
32.3
Major PPT
74.6
0.55
0.8
66
35.9
Minor 5ss
33.3
-1.9
3.5
42.7
39.1
Minor BPS
57.1
0.2
1.7
66.36
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023331
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026105
25230517 - 25234651
4135