About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25232111_25233367_R

Intron Information:

Intron Rank:
141232
Intron Class:
major
Intron Phase:
Intron Coordinates:
25232111 - 25233367
Intron Length:
1257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
GTTCCCCCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
80.7
31.6
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
80.6
0.69
0.8
77.3
31.4
Minor 5ss
36.5
-1.5
3.6
53.2
45
Minor BPS
47.1
-0.1
2.1
71.99
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023331
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026105
25230517 - 25234651
4135
ENSAPLT00000017507
25230971 - 25237685
6715