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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25246695_25248201_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25246695 - 25248201
Intron Length:
1507

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCATGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CAATGTATAACT
Flanking Amino Acid:
LILGFMAGSRENPCQEQGDI
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.9
90.9
28.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
84.1
0.77
0.8
79.2
32.9
Minor 5ss
37.4
-1.4
3.9
59.2
45.4
Minor BPS
48.4
-0
2
66.7
43.8

Associated Gene:

Gene:
NELFA
Ensembl Gene ID:
ENSAPLG00000004120
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004264
25246453 - 25267518
21066