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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25249572_25251849_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25249572 - 25251849
Intron Length:
2278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TTGTTCTTCACA
Flanking Amino Acid:
SYIPSSETQPAGSAREALQT
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
30.5
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
84.6
0.78
0.8
80
32.1
Minor 5ss
31.4
-2.1
3.5
46.6
48.7
Minor BPS
68.4
0.57
1.7
78.47
38.6

Associated Gene:

Gene:
NELFA
Ensembl Gene ID:
ENSAPLG00000004120
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004264
25246453 - 25267518
21066