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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25253112_25253896_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25253112 - 25253896
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTGGTATA
5'SS Class:
major
3'SS Sequence:
TTCTATGTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTTCCTTGAACT
Flanking Amino Acid:
REAKRRRKTLDTEVVEKQAK
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.2
79.2
36.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
69.5
0.44
1
65.8
39.5
Minor 5ss
34.3
-1.8
2.9
42.6
44.3
Minor BPS
68.4
0.65
1.4
82.32
38.9

Associated Gene:

Gene:
NELFA
Ensembl Gene ID:
ENSAPLG00000004120
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004264
25246453 - 25267518
21066