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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25258993_25260115_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25258993 - 25260115
Intron Length:
1123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTTATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ACTGTGTTAACT
Flanking Amino Acid:
QDILGELREKVSECETSAML
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97
1.11
0.7
88.7
23.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
78.4
0.64
0.9
73.5
35.4
Minor 5ss
37.2
-1.4
3.3
52
45.2
Minor BPS
53.7
0.19
2.2
73.16
44.2

Associated Gene:

Gene:
NELFA
Ensembl Gene ID:
ENSAPLG00000004120
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004264
25246453 - 25267518
21066