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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25260288_25267253_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25260288 - 25267253
Intron Length:
6966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTGTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
ATTGGCTGATTT
Flanking Amino Acid:
LHLPRRAVDEMKGALTEIIQ
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
82.3
0.73
0.9
84.6
30.3
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
45.4
-0.2
2.1
66.83
44.3

Associated Gene:

Gene:
NELFA
Ensembl Gene ID:
ENSAPLG00000004120
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004264
25246453 - 25267518
21066