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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25290549_25295552_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25290549 - 25295552
Intron Length:
5004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TCTCTTGATAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TCCTCCCTGACT
Flanking Amino Acid:
MAEREAPVPKMLA
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
65.9
0.36
1.1
66.9
37.6
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
65.5
0.57
1.7
79.98
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016870
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023025
25290540 - 25305167
14628