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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25313743_25318956_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25313743 - 25318956
Intron Length:
5214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTACC
5'SS Class:
major
3'SS Sequence:
TACCTTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAT
U12 Branch Point Sequence:
TTTTCTGTACCT
Flanking Amino Acid:
QDSGSVIPAESRPCVDCHAF
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
72.7
35.1
Major BPS
61.1
0.28
1.2
52.7
43.2
Major PPT
76.7
0.6
0.8
69
36.7
Minor 5ss
37.3
-1.4
3
46.6
35.6
Minor BPS
60.1
0.4
2.3
87.23
39

Associated Gene:

Gene:
C4orf48
Ensembl Gene ID:
ENSAPLG00000027604
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031959
25312292 - 25323053
10762