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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2531899_2533991_F

Intron Information:

Intron Rank:
128428
Intron Class:
major
Intron Phase:
Intron Coordinates:
2531899 - 2533991
Intron Length:
2093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTGAATTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.7
37.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.6
0.78
0.8
77.5
36.5
Minor 5ss
34.3
-1.8
3.4
47
48.3
Minor BPS
50.6
0.02
1.9
65.2
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019157
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026231
2510474 - 2534290
23817