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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25319046_25322905_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25319046 - 25322905
Intron Length:
3860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATTTTTTAATT
Flanking Amino Acid:
KKTAYNLDTRTESLLLRAEK
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
77.9
36.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
93.1
0.97
0.7
92.4
26
Minor 5ss
44.3
-0.6
3.2
57.9
46.7
Minor BPS
75.3
0.87
1
82.84
32

Associated Gene:

Gene:
C4orf48
Ensembl Gene ID:
ENSAPLG00000027604
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031959
25312292 - 25323053
10762