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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25336030_25354726_R

Intron Information:

Intron Rank:
152858
Intron Class:
major
Intron Phase:
Intron Coordinates:
25336030 - 25354726
Intron Length:
18697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
AACTGCTGACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
69.8
0.49
1
61
37.5
Major PPT
89
0.88
0.6
84.5
23.3
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
45
-0.4
2.1
54.65
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029799
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047367
25335327 - 25355756
20430