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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25366321_25373637_F

Intron Information:

Intron Rank:
137422
Intron Class:
major
Intron Phase:
Intron Coordinates:
25366321 - 25373637
Intron Length:
7317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TACATTTCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
74.9
35.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
83.2
0.75
0.9
76.5
37.7
Minor 5ss
28.5
-2.5
3.4
40.8
45.6
Minor BPS
51.7
0.03
1.5
59.92
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023988
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020928
25359481 - 25376490
17010