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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25413743_25413954_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25413743 - 25413954
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCCCTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTTATT
Flanking Amino Acid:
DIEQYYMKPPDVQSSSAASI
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
71.4
40.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
67.7
0.4
0.9
71.7
26.8
Minor 5ss
29.1
-2.4
2.7
33
41.9
Minor BPS
69.2
0.69
1.5
86.8
32.8

Associated Gene:

Gene:
NAT8L
Ensembl Gene ID:
ENSAPLG00000004458
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040964
25411763 - 25435040
23278