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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25456690_25459042_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25456690 - 25459042
Intron Length:
2353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGCA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAA
U12 Branch Point Sequence:
TTTTTTTTGACA
Flanking Amino Acid:
QTTALEVPLKVPLKVILTTG
Intron Amino Acid Position:
678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
39.1
Major BPS
72.6
0.56
1.2
75.9
36.3
Major PPT
89
0.88
0.8
87.5
30
Minor 5ss
28.1
-2.5
3.6
38.3
46.9
Minor BPS
79.3
0.92
1
85.48
26.3

Associated Gene:

Gene:
POLN
Ensembl Gene ID:
ENSAPLG00000004531
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030513
25456621 - 25550628
94008
ENSAPLT00000004654
25456621 - 25559172
102552