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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25459105_25467143_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25459105 - 25467143
Intron Length:
8039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGGCCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TATATTTCAACT
Flanking Amino Acid:
VEDSQIQEFSALVKRTMESL
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
80.5
0.69
0.9
73
37.5
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
61.7
0.44
1.5
77.89
38.2

Associated Gene:

Gene:
POLN
Ensembl Gene ID:
ENSAPLG00000004531
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004654
25456621 - 25559172
102552
ENSAPLT00000030513
25456621 - 25550628
94008