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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25509707_25510133_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25509707 - 25510133
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTATTTTAACA
Flanking Amino Acid:
SKKGYTFLAADFSHIELRIL
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79.9
0.67
0.8
72.5
37.7
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
77.6
0.86
1.1
83.48
30.3

Associated Gene:

Gene:
POLN
Ensembl Gene ID:
ENSAPLG00000004531
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030513
25456621 - 25550628
94008
ENSAPLT00000004654
25456621 - 25559172
102552