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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25542170_25549283_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
25542170 - 25549283
Intron Length:
7114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TTGATTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
GTTCACTGAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
73
33.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
84.7
0.78
0.9
77
41.9
Minor 5ss
30.9
-2.2
2.6
29.7
36.6
Minor BPS
50.9
0.02
1.8
65.84
39.2

Associated Gene:

Gene:
POLN
Ensembl Gene ID:
ENSAPLG00000004531
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030513
25456621 - 25550628
94008
ENSAPLT00000004654
25456621 - 25559172
102552