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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25549428_25559064_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
25549428 - 25559064
Intron Length:
9637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTACGTTTT
5'SS Class:
major
3'SS Sequence:
GTTTCGTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
GCATGCATAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
81
33.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
71.7
0.49
1
69.7
41.5
Minor 5ss
47.5
-0.2
3.1
71
39.4
Minor BPS
48.9
-0
2
66.42
44.2

Associated Gene:

Gene:
POLN
Ensembl Gene ID:
ENSAPLG00000004531
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004654
25456621 - 25559172
102552