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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25552552_25553876_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25552552 - 25553876
Intron Length:
1325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
ATTTTTTTATTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TATTTTTTTATT
Flanking Amino Acid:
GGNQLLFSSRELTEQFNQLE
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
68
42.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
81.7
0.71
0.8
82.8
32.9
Minor 5ss
42.5
-0.8
2.8
51.6
44.8
Minor BPS
63.9
0.52
1.5
80
36.6

Associated Gene:

Gene:
HAUS3
Ensembl Gene ID:
ENSAPLG00000004991
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005142
25552285 - 25559172
6888