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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25554103_25555749_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25554103 - 25555749
Intron Length:
1647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTGTTACAG
Flanking Amino Acid:
TIGPKDDFSRRLYQLLEGED
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.3
0.86
0.8
83.2
31.9
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
47.5
-0.3
2.4
63.72
44.3

Associated Gene:

Gene:
HAUS3
Ensembl Gene ID:
ENSAPLG00000004991
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005142
25552285 - 25559172
6888