Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25556187_25557272_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25556187 - 25557272

Intron Length:

1086

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCCAC

5'SS Class:

strong_major

3'SS Sequence:

TTGCTTTATGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTGAC

U12 Branch Point Sequence:

TTTTGCTTTATG

Flanking Amino Acid:

ESMLKTLKNEGVGKQENLEA

Intron Amino Acid Position:

305

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.9

72.3

39.5

Major BPS

69.9

0.49

0.9

61.1

36.4

Major PPT

81.2

0.7

0.9

77.3

Minor 5ss

38.2

-1.3

3.1

50.1

46.5

Minor BPS

57.9

0.1

2.1

71.2

42.2

Associated Gene:

Gene:

HAUS3

Ensembl Gene ID:

ENSAPLG00000004991

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005142

25552285 - 25559172

6888