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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25570034_25571063_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25570034 - 25571063
Intron Length:
1030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGCAA
5'SS Class:
major
3'SS Sequence:
GTGTTTCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CGTTTCTGAAAA
Flanking Amino Acid:
GSTISTDSEQEVDIEGMEFT
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.2
65.8
41.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
76.7
0.6
0.8
74.6
36.4
Minor 5ss
35.6
-1.6
3.3
47
48.3
Minor BPS
57.6
0.23
1.6
66.07
39.9

Associated Gene:

Gene:
MXD4
Ensembl Gene ID:
ENSAPLG00000004997
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005148
25569885 - 25602693
32809