About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25594526_25602205_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25594526 - 25602205
Intron Length:
7680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
APLARRAPSSRSSHNELEKH
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.3
37.2
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
86.6
0.82
0.7
85.3
27.9
Minor 5ss
32
-2.1
3.3
42.6
44.4
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
MXD4
Ensembl Gene ID:
ENSAPLG00000004997
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005148
25569885 - 25602693
32809