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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25602306_25602629_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25602306 - 25602629
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGGGG
5'SS Class:
major
3'SS Sequence:
ACTTTGTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TAACGCTGACTT
Flanking Amino Acid:
AAEYLERRDREAEHGYASVL
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
58.9
46
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
74.5
0.55
0.9
65.7
40.4
Minor 5ss
27.5
-2.6
3.6
37.8
47
Minor BPS
43.8
-0.3
2
60.53
42.8

Associated Gene:

Gene:
MXD4
Ensembl Gene ID:
ENSAPLG00000004997
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005148
25569885 - 25602693
32809