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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25663652_25664379_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25663652 - 25664379
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CTTCAGGGAACT
Flanking Amino Acid:
RKHHCRSCGKIFCSRCSSHS
Intron Amino Acid Position:
848

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
78
36.1
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
93
0.97
0.6
91.8
19.1
Minor 5ss
35
-1.7
3.2
50
45.9
Minor BPS
38.7
-0.7
2.6
63.18
46.4

Associated Gene:

Gene:
ZFYVE28
Ensembl Gene ID:
ENSAPLG00000004999
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039249
25663520 - 25806496
142977
ENSAPLT00000034887
25663520 - 25736261
72742
ENSAPLT00000005174
25663520 - 25760900
97381
ENSAPLT00000043600
25663520 - 25806496
142977
ENSAPLT00000042710
25663520 - 25806496
142977