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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25664484_25675480_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25664484 - 25675480
Intron Length:
10997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTCT
5'SS Class:
major
3'SS Sequence:
GTGTTTCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTGATTTATCT
Flanking Amino Acid:
AAKARDGDFEDPPDWVPDEV
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
74.5
36.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
72.9
0.52
1.1
68.8
42.1
Minor 5ss
41.8
-0.9
3
60.1
44.2
Minor BPS
51.6
0.13
1.9
72.15
45.1

Associated Gene:

Gene:
ZFYVE28
Ensembl Gene ID:
ENSAPLG00000004999
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005174
25663520 - 25760900
97381
ENSAPLT00000043600
25663520 - 25806496
142977
ENSAPLT00000039249
25663520 - 25806496
142977
ENSAPLT00000034887
25663520 - 25736261
72742