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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25664484_25676633_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25664484 - 25676633
Intron Length:
12150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGAGA
5'SS Class:
major
3'SS Sequence:
GTGTTTCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTGATTTATCT
Flanking Amino Acid:
ETEDKEKQKKDPPDWVPDEV
Intron Amino Acid Position:
946

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
68.1
38.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
72.9
0.52
1.1
68.8
42.1
Minor 5ss
25.5
-2.8
3
30.9
42.7
Minor BPS
51.6
0.13
1.9
72.15
45.1

Associated Gene:

Gene:
ZFYVE28
Ensembl Gene ID:
ENSAPLG00000004999
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042710
25663520 - 25806496
142977