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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25675586_25676633_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25675586 - 25676633
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGAGA
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
GTTTGTTTTACA
Flanking Amino Acid:
ETEDKEKQKKVNQGLRNAAL
Intron Amino Acid Position:
778

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
68.1
38.5
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
86
0.81
0.8
79.9
37.7
Minor 5ss
25.5
-2.8
3
30.9
42.7
Minor BPS
55.3
0.16
2.1
71.79
40.2

Associated Gene:

Gene:
ZFYVE28
Ensembl Gene ID:
ENSAPLG00000004999
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034887
25663520 - 25736261
72742
ENSAPLT00000005174
25663520 - 25760900
97381
ENSAPLT00000043600
25663520 - 25806496
142977
ENSAPLT00000039249
25663520 - 25806496
142977