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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25676751_25677333_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25676751 - 25677333
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCAATCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTTTTCTCAATC
Flanking Amino Acid:
LIHRLFVCISGVADQLQTNY
Intron Amino Acid Position:
739

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
67.7
37.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
66.5
0.37
0.9
57.8
38.1
Minor 5ss
35.9
-1.6
3.3
46.1
49.1
Minor BPS
67.7
0.53
1.5
75.08
35.4

Associated Gene:

Gene:
ZFYVE28
Ensembl Gene ID:
ENSAPLG00000004999
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042710
25663520 - 25806496
142977
ENSAPLT00000039249
25663520 - 25806496
142977
ENSAPLT00000034887
25663520 - 25736261
72742
ENSAPLT00000005174
25663520 - 25760900
97381
ENSAPLT00000043600
25663520 - 25806496
142977