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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25708823_25712011_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25708823 - 25712011
Intron Length:
3189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTCTGAACTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTGTCTGAACT
Flanking Amino Acid:
MFTIPRLAIVCGLVVYSEGP
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
100
1.24
0.5
100
0
Major PPT
67.7
0.4
1
58.8
41
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
66
0.58
1.6
81.31
40.1

Associated Gene:

Gene:
ZFYVE28
Ensembl Gene ID:
ENSAPLG00000004999
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005174
25663520 - 25760900
97381
ENSAPLT00000043600
25663520 - 25806496
142977
ENSAPLT00000042710
25663520 - 25806496
142977
ENSAPLT00000039249
25663520 - 25806496
142977
ENSAPLT00000034887
25663520 - 25736261
72742