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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25719216_25733694_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25719216 - 25733694
Intron Length:
14479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTTGA
5'SS Class:
major
3'SS Sequence:
TATTTTGCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTTCTTATAT
Flanking Amino Acid:
EDLAPWISNADNVLNIINQI
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
64.4
38.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.8
0.76
0.9
81.6
35.8
Minor 5ss
37
-1.5
2.9
50
46.3
Minor BPS
64.6
0.54
1.7
81.78
39.4

Associated Gene:

Gene:
ZFYVE28
Ensembl Gene ID:
ENSAPLG00000004999
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034887
25663520 - 25736261
72742