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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25719216_25736120_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
25719216 - 25736120
Intron Length:
16905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCAGA
5'SS Class:
major
3'SS Sequence:
TATTTTGCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTTCTTATAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.8
41.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.8
0.76
0.9
81.6
35.8
Minor 5ss
38.8
-1.3
2.8
49.6
46.2
Minor BPS
64.6
0.54
1.7
81.78
39.4

Associated Gene:

Gene:
ZFYVE28
Ensembl Gene ID:
ENSAPLG00000004999
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039249
25663520 - 25806496
142977
ENSAPLT00000005174
25663520 - 25760900
97381
ENSAPLT00000043600
25663520 - 25806496
142977
ENSAPLT00000042710
25663520 - 25806496
142977