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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25733748_25736120_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25733748 - 25736120
Intron Length:
2373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCAGA
5'SS Class:
major
3'SS Sequence:
ACACTTTTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ATTTGATTGATA
Flanking Amino Acid:
AASQPVSLLSVNSLFKTSED
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.8
41.1
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
78.6
0.64
0.9
72.1
37.1
Minor 5ss
38.8
-1.3
2.8
49.6
46.2
Minor BPS
51.7
0.05
2
69.57
36.6

Associated Gene:

Gene:
ZFYVE28
Ensembl Gene ID:
ENSAPLG00000004999
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034887
25663520 - 25736261
72742