About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25807425_25809528_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
25807425 - 25809528
Intron Length:
2104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGGAGA
5'SS Class:
major
3'SS Sequence:
ACTATATTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTACTATATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.3
65.7
41.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
72.8
0.51
0.9
65.9
39.3
Minor 5ss
27.6
-2.6
3
29.7
36.2
Minor BPS
52.8
0.16
1.9
77.47
39.3

Associated Gene:

Gene:
CFAP99
Ensembl Gene ID:
ENSAPLG00000005144
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045695
25807351 - 25863290
55940