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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25807425_25819580_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25807425 - 25819580
Intron Length:
12156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGGAGA
5'SS Class:
major
3'SS Sequence:
TGTATCTCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAATTATTAATT
Flanking Amino Acid:
LRSVALFLAHTLNVTEEKFV
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.3
65.7
41.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
75.9
0.58
0.9
69.8
36.6
Minor 5ss
27.6
-2.6
3
29.7
36.2
Minor BPS
66
0.58
1.5
79.1
36.6

Associated Gene:

Gene:
CFAP99
Ensembl Gene ID:
ENSAPLG00000005144
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005309
25807356 - 25863290
55935