Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25822721_25829175_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25822721 - 25829175

Intron Length:

6455

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGATA

5'SS Class:

strong_major

3'SS Sequence:

CCCTTATTACTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

TATCCCTTATTA

Flanking Amino Acid:

KSQDTAKMHKFLRFFFNALY

Intron Amino Acid Position:

104

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

80.6

33.4

Major BPS

81.6

0.78

0.8

24.9

Major PPT

68.7

0.42

0.9

62.5

37.5

Minor 5ss

35.9

-1.6

3.2

48.7

47.1

Minor BPS

66.3

0.51

1.6

74.3

37.2

Associated Gene:

Gene:

CFAP99

Ensembl Gene ID:

ENSAPLG00000005144

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045695

25807351 - 25863290

55940

ENSAPLT00000045482

25809529 - 25863290

53762

ENSAPLT00000005309

25807356 - 25863290

55935