Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25829289_25831429_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25829289 - 25831429

Intron Length:

2141

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCAGT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTATTTGAAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

CTATTTTTATTT

Flanking Amino Acid:

VKENWIDPLLRWQPKVQQLI

Intron Amino Acid Position:

141

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.95

0.9

81.8

38.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

81.9

0.72

83.8

30.3

Minor 5ss

41.1

-1

2.9

57.9

46.4

Minor BPS

57.7

0.32

1.6

71.47

40.5

Associated Gene:

Gene:

CFAP99

Ensembl Gene ID:

ENSAPLG00000005144

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045695

25807351 - 25863290

55940

ENSAPLT00000045482

25809529 - 25863290

53762

ENSAPLT00000005309

25807356 - 25863290

55935