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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25836499_25838666_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25836499 - 25838666
Intron Length:
2168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATTGCTTTAATT
Flanking Amino Acid:
VKIKNRQKAEDLLLKANTDQ
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.3
26.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
72.5
0.51
0.9
63.5
41.9
Minor 5ss
38
-1.4
3.3
49.4
41.3
Minor BPS
75.6
0.88
1.2
85.82
34.8

Associated Gene:

Gene:
CFAP99
Ensembl Gene ID:
ENSAPLG00000005144
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045695
25807351 - 25863290
55940
ENSAPLT00000045482
25809529 - 25863290
53762
ENSAPLT00000005309
25807356 - 25863290
55935