About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25839720_25841842_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25839720 - 25841842
Intron Length:
2123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CCTTTCTTGACA
Flanking Amino Acid:
AFRAQKIQSKIDNIPIKLNA
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
78.7
0.65
0.9
75.4
33.1
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
72.2
0.69
1.2
73.38
39

Associated Gene:

Gene:
CFAP99
Ensembl Gene ID:
ENSAPLG00000005144
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045695
25807351 - 25863290
55940
ENSAPLT00000045482
25809529 - 25863290
53762
ENSAPLT00000005309
25807356 - 25863290
55935