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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25841932_25843993_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25841932 - 25843993
Intron Length:
2062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGATCA
5'SS Class:
strong_major
3'SS Sequence:
TTCACTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TCTTCTTTCACT
Flanking Amino Acid:
YQRKMEQELKRIENLLRGAG
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.5
34.8
Major BPS
77.7
0.69
1
81
30.2
Major PPT
82.6
0.73
0.8
76.9
31.6
Minor 5ss
37.2
-1.5
3.2
48.6
47
Minor BPS
72.5
0.79
1.7
87.23
39

Associated Gene:

Gene:
CFAP99
Ensembl Gene ID:
ENSAPLG00000005144
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045695
25807351 - 25863290
55940
ENSAPLT00000045482
25809529 - 25863290
53762
ENSAPLT00000005309
25807356 - 25863290
55935